zktuong/dandelion: v0.2.2 ...
Zenodo, 2022
Online
Elektronische Ressource
Zugriff:
What's Changed try and add youtube video to docs by @zktuong in https://github.com/zktuong/dandelion/pull/148 testing_rpy2_update by @zktuong in https://github.com/zktuong/dandelion/pull/150 Speed upgrade - Refactor generate network by @zktuong in https://github.com/zktuong/dandelion/pull/152 remove nxviz from requirements by @zktuong in https://github.com/zktuong/dandelion/pull/157 Bug fixes and Improvements Speed up generate_network pair-wise hamming distance is calculated on per clone/clonotype only if more than 1 cell is assigned to a clone/clonotype .distance slot is removed and is now directly stored/converted from the .graph slot. new options: compute_layout: bool = True . If dataset is too large, generate_layout can be switched to False in which case only the networkx graph is returned. The data can still be visualised later with scirpy's plotting method (see below). layout_method: Literal['sfdp', 'mod_fr'] = 'sfdp' . New default uses the ultra-fast C++ implemented sfdp_layout algorithm in ...
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zktuong/dandelion: v0.2.2 ...
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Autor/in / Beteiligte Person: | Zewen Kelvin Tuong ; Polanski, Krzysztof ; Sturm, Gregor |
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Veröffentlichung: | Zenodo, 2022 |
Medientyp: | Elektronische Ressource |
DOI: | 10.5281/zenodo.6759792 |
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