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The HD-Zip family of transcription factors is unique to the plant kingdom, and play roles in modulation of plant growth and response to environmental stresses. R. glutinosa is an important Chinese medicinal material. Its yield and quality are susceptible to various stresses. The HD-Zip transcription factors is unique to the plant, and roles in modulation of plant growth and response to environmental stresses. However, there is no relevant research on the HD-ZIP of R. glutinosa . In this study, 92 HD-Zip transcription factors were identified in R. glutinosa , and denominated as RgHDZ1-RgHDZ92. Members of RgHDZ were classified into four groups (HD-ZipI-IV) based on the phylogenetic relationship of Arabidopsis HD-Zip proteins, and each group contains 38, 18, 17, and 19 members, respectively. Expression analyses of RgHDZ genes based on transcriptome data showed that the expression of these genes could be induced by the endophytic fungus of R. glutinosa . Additionally, we showed that RgHDZ genes were differentially expressed in response to drought, waterlogging, temperature, and salinity treatments. This study provides important information for different expression patterns of stress-responsive HD-Zip and may contribute to the better understanding of the different responses of plants to biotic and abiotic stresses, and provide a molecular basis for the cultivation of resistant varieties of R. glutinosa .

Titel:	Genome-wide identification and characterization of the HD-Zip gene family and expression analysis in response to stress in Rehmannia glutinosa Libosch.
Autor/in / Beteiligte Person:	Zhu, Y ; Peng, S ; Zhao, L ; Feng, W ; Dong, C
Link:	Zum Volltext
Zeitschrift:	Plant signaling & behavior, Jg. 17 (2022-12-31), Heft 1, S. 2096787
Veröffentlichung:	2015- : Philadelphia, PA : Taylor & Francis ; <i>Original Publication</i>: Georgetown, TX : Landes Bioscience, 2022
Medientyp:	academicJournal
ISSN:	1559-2324 (electronic)
DOI:	10.1080/15592324.2022.2096787
Schlagwort:	Phylogeny Plant Proteins genetics Plant Proteins metabolism Transcription Factors metabolism Gene Expression Regulation, Plant genetics Rehmannia genetics Rehmannia metabolism
Sonstiges:	Nachgewiesen in: MEDLINE Sprachen: English Publication Type: Journal Article; Research Support, Non-U.S. Gov't Language: English [Plant Signal Behav] 2022 Dec 31; Vol. 17 (1), pp. 2096787. MeSH Terms: Gene Expression Regulation, Plant* / genetics ; Rehmannia* / genetics ; Rehmannia* / metabolism ; Phylogeny ; Plant Proteins / genetics ; Plant Proteins / metabolism ; Transcription Factors / metabolism References: EMBO J. 2004 Aug 18;23(16):3356-64. (PMID: 15282547) ; Development. 2005 Jan;132(2):291-8. (PMID: 15590742) ; Planta. 2021 Feb 01;253(2):55. (PMID: 33523295) ; Plant Physiol. 2018 Aug;177(4):1691-1703. (PMID: 29925586) ; Genes (Basel). 2021 Aug 17;12(8):. (PMID: 34440430) ; Cell. 2011 Aug 5;146(3):353-8. (PMID: 21802130) ; J Exp Bot. 2015 Aug;66(16):5043-53. (PMID: 25911742) ; J Exp Bot. 2020 Dec 31;71(22):7132-7145. (PMID: 32930788) ; Plant Signal Behav. 2013 Sep;8(9):. (PMID: 23838958) ; Sci Rep. 2019 Feb 26;9(1):2832. (PMID: 30808969) ; BMC Genomics. 2019 Oct 16;20(1):748. (PMID: 31619177) ; J Exp Bot. 2020 Sep 19;71(18):5425-5437. (PMID: 32490515) ; Cell Res. 2007 Mar;17(3):212-8. (PMID: 17130846) ; BMC Genomics. 2017 Sep 21;18(1):744. (PMID: 28934927) ; Plant Signal Behav. 2012 Nov;7(11):1382-7. (PMID: 22918502) ; Plant Mol Biol. 2008 Jan;66(1-2):87-103. (PMID: 17999151) ; Plant Biotechnol J. 2012 Sep;10(7):815-25. (PMID: 22564282) ; Comput Struct Biotechnol J. 2021 Jul 08;19:3954-3963. (PMID: 34377362) ; Front Chem. 2018 Mar 02;6:34. (PMID: 29552555) ; Plant Cell Rep. 2021 Jan;40(1):187-204. (PMID: 33098450) ; Front Plant Sci. 2017 Dec 15;8:2118. (PMID: 29326734) ; Plant Sci. 2019 Nov;288:110208. (PMID: 31521223) ; Sci Rep. 2017 Jun 13;7(1):3408. (PMID: 28611467) ; Plant J. 1996 Aug;10(2):375-81. (PMID: 8771791) ; Plant Physiol Biochem. 2017 Feb;111:329-339. (PMID: 27992771) ; PLoS Genet. 2006 Jun;2(6):e89. (PMID: 16846251) ; Genome. 2015 Jan;58(1):13-24. (PMID: 25955479) ; Sci Rep. 2020 Feb 20;10(1):3041. (PMID: 32080299) ; Plant Physiol. 2005 Jun;138(2):1083-96. (PMID: 15923334) ; Plant J. 2009 Sep;59(6):883-94. (PMID: 19453441) ; Plant Signal Behav. 2018 Mar 4;13(3):e1448334. (PMID: 29509063) ; J Allergy Clin Immunol. 2018 Apr;141(4):1202-1207. (PMID: 29074454) ; Curr Biol. 2003 Oct 14;13(20):1768-74. (PMID: 14561401) ; Int J Mol Sci. 2020 May 04;21(9):. (PMID: 32375344) ; Nature. 2004 Mar 4;428(6978):84-8. (PMID: 14999285) ; Plant Cell Environ. 2019 Sep;42(9):2681-2695. (PMID: 31115921) ; Plant Direct. 2020 Mar 26;4(3):e00204. (PMID: 32226917) ; Plant Physiol. 2001 Jun;126(2):549-63. (PMID: 11402186) ; Plant Sci. 2019 Jan;278:12-19. (PMID: 30471725) ; Crit Rev Biotechnol. 2017 Sep;37(6):685-700. (PMID: 26912350) ; Science. 1997 Aug 22;277(5329):1113-6. (PMID: 9262483) ; Plants (Basel). 2020 Jan 16;9(1):. (PMID: 31963238) ; Mol Plant. 2009 Jul;2(4):790-802. (PMID: 19825656) ; Plant Biotechnol J. 2021 Jan;19(1):17-19. (PMID: 32621307) ; PLoS One. 2012;7(2):e31149. (PMID: 22359569) ; New Phytol. 2021 Aug;231(3):1265-1277. (PMID: 33469925) ; Front Plant Sci. 2017 Dec 13;8:2125. (PMID: 29326737) ; PLoS One. 2013 May 07;8(5):e62681. (PMID: 23667507) ; Plant Mol Biol. 1999 Aug;40(6):1073-83. (PMID: 10527431) ; Plant Cell. 2018 Jan;30(1):228-244. (PMID: 29237723) ; Genomics. 2019 Sep;111(5):1142-1151. (PMID: 30031053) ; Development. 2014 Dec;141(24):4772-83. (PMID: 25395454) ; Plants (Basel). 2013 Dec 05;2(4):769-85. (PMID: 27137403) ; PeerJ. 2018 Dec 21;6:e6209. (PMID: 30595993) ; PLoS One. 2011;6(12):e28488. (PMID: 22164299) ; Mol Biol Evol. 2009 Dec;26(12):2775-94. (PMID: 19734295) Contributed Indexing: Keywords: HD-Zip transcription factors; Rehmannia glutinosa Libosch; bioinformatics analysis; biotic and abiotic stresses Substance Nomenclature: 0 (Plant Proteins) ; 0 (Transcription Factors) Entry Date(s): Date Created: 20220728 Date Completed: 20220729 Latest Revision: 20220822 Update Code: 20231215 PubMed Central ID: PMC9336491

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Genome-wide identification and characterization of the HD-Zip gene family and expression analysis in response to stress in Rehmannia glutinosa Libosch.