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Soybean is one of the most important crops worldwide. Brazil and the United States (US) are the world's two biggest producers of this legume. The increase of publicly available DNA sequencing data as well as high-density genotyping data of multiple soybean germplasms has made it possible to understand the genetic relationships and identify genomics regions that underwent selection pressure during soy domestication and breeding. In this study, we analyzed the genetic relationships between Brazilian (N = 235) and US soybean cultivars (N = 675) released in different decades and screened for genomic signatures between Brazilian and US cultivars. The population structure analysis demonstrated that the Brazilian germplasm has a narrower genetic base than the US germplasm. The US cultivars were grouped according to maturity groups, while Brazilian cultivars were separated according to decade of release. We found 73 SNPs that differentiate Brazilian and US soybean germplasm. Maturity-associated SNPs showed high allelic frequency differences between Brazilian and US accessions. Other important loci were identified separating cultivars released before and after 1996 in Brazil. Our data showed important genomic regions under selection during decades of soybean breeding in Brazil and the US that should be targeted to adapt lines from different origins in these countries.

Titel:	Genetic relationships and genome selection signatures between soybean cultivars from Brazil and United States after decades of breeding.
Autor/in / Beteiligte Person:	Maldonado Dos Santos, JV ; Sant'Ana, GC ; Wysmierski, PT ; Todeschini, MH ; Garcia, A ; Meda, AR
Link:	Zum Volltext
Zeitschrift:	Scientific reports, Jg. 12 (2022-06-23), Heft 1, S. 10663
Veröffentlichung:	London : Nature Publishing Group, copyright 2011-, 2022
Medientyp:	academicJournal
ISSN:	2045-2322 (electronic)
DOI:	10.1038/s41598-022-15022-y
Schlagwort:	Brazil Genome, Plant Genomics Polymorphism, Single Nucleotide United States Plant Breeding Glycine max genetics
Sonstiges:	Nachgewiesen in: MEDLINE Sprachen: English Publication Type: Journal Article; Research Support, Non-U.S. Gov't Language: English [Sci Rep] 2022 Jun 23; Vol. 12 (1), pp. 10663. <i>Date of Electronic Publication: </i>2022 Jun 23. MeSH Terms: Plant Breeding* ; Glycine max* / genetics ; Brazil ; Genome, Plant ; Genomics ; Polymorphism, Single Nucleotide ; United States References: Mol Breed. 2017;37(1):8. (PMID: 28127254) ; Plant Dis. 1997 Jan;81(1):107-110. (PMID: 30870925) ; BMC Genomics. 2016 Feb 13;17:110. (PMID: 26872939) ; BMC Plant Biol. 2016 Jan 19;16:20. (PMID: 26786479) ; Bioinformatics. 2007 Oct 1;23(19):2633-5. (PMID: 17586829) ; Front Plant Sci. 2021 Jun 21;12:615019. (PMID: 34234792) ; PLoS One. 2017 Feb 2;12(2):e0171105. (PMID: 28152092) ; Bioinformatics. 2011 Aug 1;27(15):2156-8. (PMID: 21653522) ; Fly (Austin). 2012 Apr-Jun;6(2):80-92. (PMID: 22728672) ; BMC Genomics. 2015 Mar 20;16:217. (PMID: 25887991) ; Am J Hum Genet. 2007 Sep;81(3):559-75. (PMID: 17701901) ; Genet Mol Biol. 2013 Dec;36(4):547-55. (PMID: 24385859) ; Proc Natl Acad Sci U S A. 2012 Aug 7;109(32):E2155-64. (PMID: 22619331) ; Springerplus. 2014 Aug 13;3:431. (PMID: 25152854) ; BMC Genomics. 2017 May 26;18(1):415. (PMID: 28549456) ; Theor Appl Genet. 2019 Nov;132(11):3089-3100. (PMID: 31384959) ; Phytopathology. 2016 Oct;106(10):1139-1151. (PMID: 27135674) ; Theor Appl Genet. 2016 Jan;129(1):117-30. (PMID: 26518570) ; Sci Rep. 2016 Mar 31;6:23598. (PMID: 27029319) ; Plant Physiol. 2010 Nov;154(3):1220-31. (PMID: 20864544) ; Nature. 2010 Jan 14;463(7278):178-83. (PMID: 20075913) ; Plant Biotechnol J. 2021 Feb;19(2):324-334. (PMID: 32794321) ; Nat Biotechnol. 2015 Apr;33(4):408-14. (PMID: 25643055) ; G3 (Bethesda). 2018 Oct 3;8(10):3367-3375. (PMID: 30131329) ; Nat Genet. 2010 Dec;42(12):1053-9. (PMID: 21076406) ; Plant Physiol. 2015 Aug;168(4):1735-46. (PMID: 26134161) ; G3 (Bethesda). 2016 Sep 08;6(9):2693-705. (PMID: 27402364) ; Genetics. 2011 Jun;188(2):395-407. (PMID: 21406680) ; Sci China Life Sci. 2018 Aug;61(8):871-884. (PMID: 30062469) ; Genetics. 2000 Jun;155(2):945-59. (PMID: 10835412) ; Evolution. 1984 Nov;38(6):1358-1370. (PMID: 28563791) ; Plant Genome. 2018 Jul;11(2):. (PMID: 30025027) ; Plant J. 2019 Dec;100(5):1066-1082. (PMID: 31433882) ; Nucleic Acids Res. 2010 Jan;38(Database issue):D843-6. (PMID: 20008513) ; G3 (Bethesda). 2015 Sep 14;5(11):2391-403. (PMID: 26374596) ; Genetics. 1989 Nov;123(3):585-95. (PMID: 2513255) ; Nat Genet. 2017 May;49(5):773-779. (PMID: 28319089) ; BMC Genomics. 2019 Oct 31;20(1):798. (PMID: 31672122) ; PLoS One. 2013;8(1):e54985. (PMID: 23372807) ; Genome. 2002 Jun;45(3):592-9. (PMID: 12033629) Entry Date(s): Date Created: 20220623 Date Completed: 20220627 Latest Revision: 20231213 Update Code: 20231215 PubMed Central ID: PMC9226155

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Genetic relationships and genome selection signatures between soybean cultivars from Brazil and United States after decades of breeding.